Index

A

addAssociations() (nmcog.spinnaker.associate.nealassoc.make3Assoc.NeuralThreeAssocClass method) addThreeAssoc() (nmcog.spinnaker.associate.nealassoc.make3Assoc.NeuralThreeAssocClass method)

answerObjectStartsObjectRetrievedFact() (nmcog.spinnaker.cognitivemap.nealmentalmap.placecellsysClass.PlaceCellSystemClass method) answerPlaceStartsPlaceRetrievedFact() (nmcog.spinnaker.cognitivemap.nealmentalmap.placecellsysClass.PlaceCellSystemClass method)

B

bindFailStopsPlaceObjectOn() (nmcog.spinnaker.cognitivemap.nealmentalmap.placecellsysClass.PlaceCellSystemClass method)

bindOnPrimesPlaceAndObjectBind() (nmcog.spinnaker.cognitivemap.nealmentalmap.placecellsysClass.PlaceCellSystemClass method) BuoMerz (class in nmcog.spinnaker.discriminate.BuonomanoMerzenich)

C

connectAutomaton() (nmcog.spinnaker.cognitivemap.nealmentalmap.placecellsysClass.PlaceCellSystemClass method) connectBindDoneState() (nmcog.spinnaker.cognitivemap.nealmentalmap.placecellsysClass.PlaceCellSystemClass method) connectBindFailState() (nmcog.spinnaker.cognitivemap.nealmentalmap.placecellsysClass.PlaceCellSystemClass method) connectBindOnState() (nmcog.spinnaker.cognitivemap.nealmentalmap.placecellsysClass.PlaceCellSystemClass method) connectObjects() (nmcog.spinnaker.cognitivemap.nealmentalmap.placecellsysClass.PlaceCellSystemClass method) connectPlaces() (nmcog.spinnaker.cognitivemap.nealmentalmap.placecellsysClass.PlaceCellSystemClass method) connectRetrieveObjectDoneState() (nmcog.spinnaker.cognitivemap.nealmentalmap.placecellsysClass.PlaceCellSystemClass method) connectRetrieveObjectState() (nmcog.spinnaker.cognitivemap.nealmentalmap.placecellsysClass.PlaceCellSystemClass method) connectRetrievePlaceDoneState() (nmcog.spinnaker.cognitivemap.nealmentalmap.placecellsysClass.PlaceCellSystemClass method) connectRetrievePlaceState() (nmcog.spinnaker.cognitivemap.nealmentalmap.placecellsysClass.PlaceCellSystemClass method) connectSpikeGenToStart() (nmcog.spinnaker.specialfunction.neal.timerClass.TimerClass method) connectStartState() (nmcog.spinnaker.cognitivemap.nealmentalmap.placecellsysClass.PlaceCellSystemClass method) createAssociationTopology() (nmcog.spinnaker.associate.nealassoc.make3Assoc.NeuralThreeAssocClass method) createAutomaton() (nmcog.spinnaker.cognitivemap.nealmentalmap.placecellsysClass.PlaceCellSystemClass method) createBaseNet() (nmcog.spinnaker.associate.nealassoc.make3Assoc.NeuralThreeAssocClass method) createNeuralInheritanceHierarchy() (nmcog.spinnaker.associate.nealassoc.makeInheritanceHier.NeuralInheritanceClass method) createNeurons() (nmcog.spinnaker.associate.nealassoc.make3Assoc.NeuralThreeAssocClass method) (nmcog.spinnaker.associate.nealassoc.makeInheritanceHier.NeuralInheritanceClass method) (nmcog.spinnaker.specialfunction.neal.timerClass.TimerClass method)

createObjects() (nmcog.spinnaker.cognitivemap.nealmentalmap.placecellsysClass.PlaceCellSystemClass method) createPlaces() (nmcog.spinnaker.cognitivemap.nealmentalmap.placecellsysClass.PlaceCellSystemClass method) createSimpleTest() (nmcog.spinnaker.associate.nealassoc.make3Assoc.NeuralThreeAssocClass method) (nmcog.spinnaker.associate.nealassoc.makeInheritanceHier.NeuralInheritanceClass method) createStopAll() (nmcog.spinnaker.associate.nealassoc.make3Assoc.NeuralThreeAssocClass method) (nmcog.spinnaker.associate.nealassoc.makeInheritanceHier.NeuralInheritanceClass method) createTestAllInheritanceUnits() (nmcog.spinnaker.associate.nealassoc.makeInheritanceHier.NeuralInheritanceClass method) createTestAllUnits() (nmcog.spinnaker.associate.nealassoc.make3Assoc.NeuralThreeAssocClass method) (nmcog.spinnaker.associate.nealassoc.makeInheritanceHier.NeuralInheritanceClass method) createTestPrimeAllBaseUnits() (nmcog.spinnaker.associate.nealassoc.make3Assoc.NeuralThreeAssocClass method) createTestPrimeAllUnits() (nmcog.spinnaker.associate.nealassoc.makeInheritanceHier.NeuralInheritanceClass method) createTimers() (nmcog.spinnaker.cognitivemap.nealmentalmap.placecellsysClass.PlaceCellSystemClass method) createTwoPrimeTest() (nmcog.spinnaker.associate.nealassoc.make3Assoc.NeuralThreeAssocClass method) createTwoPrimeTestPoisson() (nmcog.spinnaker.associate.nealassoc.make3Assoc.NeuralThreeAssocClass method) createTwoTest() (nmcog.spinnaker.associate.nealassoc.make3Assoc.NeuralThreeAssocClass method) createUnitTests() (nmcog.spinnaker.associate.nealassoc.make3Assoc.NeuralThreeAssocClass method) createViaRead() (nmcog.spinnaker.associate.nealassoc.readInheritanceFile.InheritanceReaderClass method) (nmcog.spinnaker.associate.nealassoc.readUnitFile.UnitReaderClass method)

F

FSAHelperFunctions (class in nmcog.spinnaker.specialfunction.neal.stateMachineClass)

G

get_results() (nmcog.spinnaker.associate.neal3way.NEAL3Way method) (nmcog.spinnaker.discriminate.BuonomanoMerzenich.BuoMerz method) getCAConnectors() (nmcog.spinnaker.specialfunction.neal.stateMachineClass.FSAHelperFunctions method)

getTimerCells() (nmcog.spinnaker.specialfunction.neal.timerClass.TimerClass method) getUnitNumber() (nmcog.spinnaker.associate.nealassoc.readInheritanceFile.InheritanceReaderClass method) (nmcog.spinnaker.associate.nealassoc.readUnitFile.UnitReaderClass method) getWellConnectedConn() (nmcog.spinnaker.cognitivemap.nealmentalmap.placecellsysClass.PlaceCellSystemClass method)

H

halfTurnOnStateFromSpikeSource() (nmcog.spinnaker.specialfunction.neal.stateMachineClass.FSAHelperFunctions method)

I

InheritanceReaderClass (class in nmcog.spinnaker.associate.nealassoc.readInheritanceFile) inhibitOneNeuronFromSpikeSource() (nmcog.spinnaker.specialfunction.neal.stateMachineClass.FSAHelperFunctions method) inhibitStateFromSpikeSource() (nmcog.spinnaker.specialfunction.neal.stateMachineClass.FSAHelperFunctions method)

initParams() (nmcog.spinnaker.specialfunction.neal.stateMachineClass.FSAHelperFunctions method) inUnits() (nmcog.spinnaker.associate.nealassoc.readInheritanceFile.InheritanceReaderClass method) (nmcog.spinnaker.associate.nealassoc.readUnitFile.UnitReaderClass method)

M

makeCA() (nmcog.spinnaker.specialfunction.neal.stateMachineClass.FSAHelperFunctions method) makeCAs() (nmcog.spinnaker.associate.nealassoc.make3Assoc.NeuralThreeAssocClass method) (nmcog.spinnaker.associate.nealassoc.makeInheritanceHier.NeuralInheritanceClass method) makeGenerator() (nmcog.spinnaker.associate.nealassoc.make3Assoc.NeuralThreeAssocClass method) (nmcog.spinnaker.associate.nealassoc.makeInheritanceHier.NeuralInheritanceClass method)

makeHiersFromHier() (nmcog.spinnaker.associate.nealassoc.makeInheritanceHier.NeuralInheritanceClass method) makeLearningSynapses() (nmcog.spinnaker.cognitivemap.nealmentalmap.placecellsysClass.PlaceCellSystemClass method) makeOneStateStopTimerSynapses() (nmcog.spinnaker.specialfunction.neal.timerClass.TimerClass method) makeStopNoRestartTimerSynapses() (nmcog.spinnaker.specialfunction.neal.timerClass.TimerClass method) makeStopTimerSynapses() (nmcog.spinnaker.specialfunction.neal.timerClass.TimerClass method)

N

NEAL3Way (class in nmcog.spinnaker.associate.neal3way) nealApplyProjections() (nmcog.spinnaker.specialfunction.neal.nealCoverClass.NealCoverFunctions method) NealCoverFunctions (class in nmcog.spinnaker.specialfunction.neal.nealCoverClass) NEALPlaceSystem (class in nmcog.spinnaker.cognitivemap.nealplacesystem) nealProjection() (nmcog.spinnaker.specialfunction.neal.nealCoverClass.NealCoverFunctions method) NeuralInheritanceClass (class in nmcog.spinnaker.associate.nealassoc.makeInheritanceHier) NeuralThreeAssocClass (class in nmcog.spinnaker.associate.nealassoc.make3Assoc) neuronStopsTimer() (nmcog.spinnaker.specialfunction.neal.timerClass.TimerClass method) nmcog.spinnaker.associate.neal3way (module) nmcog.spinnaker.associate.nealassoc.make3Assoc (module)

nmcog.spinnaker.associate.nealassoc.makeInheritanceHier (module) nmcog.spinnaker.associate.nealassoc.readInheritanceFile (module) nmcog.spinnaker.associate.nealassoc.readUnitFile (module) nmcog.spinnaker.cognitivemap.nealmentalmap.placecellsysClass (module) nmcog.spinnaker.cognitivemap.nealplacesystem (module) nmcog.spinnaker.discriminate.BuonomanoMerzenich (module) nmcog.spinnaker.specialfunction.neal.nealCoverClass (module) nmcog.spinnaker.specialfunction.neal.stateMachineClass (module) nmcog.spinnaker.specialfunction.neal.timerClass (module) nopMakeCA() (nmcog.spinnaker.specialfunction.neal.stateMachineClass.FSAHelperFunctions method)

O

oneNeuronHalfStartsTimer() (nmcog.spinnaker.specialfunction.neal.timerClass.TimerClass method) oneNeuronHalfTurnsOffState() (nmcog.spinnaker.specialfunction.neal.stateMachineClass.FSAHelperFunctions method) oneNeuronHalfTurnsOnOneNeuron() (nmcog.spinnaker.specialfunction.neal.stateMachineClass.FSAHelperFunctions method) oneNeuronHalfTurnsOnState() (nmcog.spinnaker.specialfunction.neal.stateMachineClass.FSAHelperFunctions method) oneNeuronInhibitsOneNeuron() (nmcog.spinnaker.specialfunction.neal.stateMachineClass.FSAHelperFunctions method) oneNeuronInhibitsState() (nmcog.spinnaker.specialfunction.neal.stateMachineClass.FSAHelperFunctions method)

oneNeuronStartsTimer() (nmcog.spinnaker.specialfunction.neal.timerClass.TimerClass method) oneNeuronStimulatesOneNeuron() (nmcog.spinnaker.specialfunction.neal.stateMachineClass.FSAHelperFunctions method) oneNeuronStimulatesState() (nmcog.spinnaker.specialfunction.neal.stateMachineClass.FSAHelperFunctions method) oneNeuronTurnsOffState() (nmcog.spinnaker.specialfunction.neal.stateMachineClass.FSAHelperFunctions method) oneNeuronTurnsOnOneNeuron() (nmcog.spinnaker.specialfunction.neal.stateMachineClass.FSAHelperFunctions method) oneNeuronTurnsOnState() (nmcog.spinnaker.specialfunction.neal.stateMachineClass.FSAHelperFunctions method)

P

PlaceCellSystemClass (class in nmcog.spinnaker.cognitivemap.nealmentalmap.placecellsysClass) plot() (nmcog.spinnaker.cognitivemap.nealplacesystem.NEALPlaceSystem method) plot_all() (nmcog.spinnaker.associate.neal3way.NEAL3Way method) plot_all_layers() (nmcog.spinnaker.discriminate.BuonomanoMerzenich.BuoMerz method) plot_output_layer_timeseries() (nmcog.spinnaker.discriminate.BuonomanoMerzenich.BuoMerz method) plot_output_layer_timeseries_vertical() (nmcog.spinnaker.discriminate.BuonomanoMerzenich.BuoMerz method)

plot_output_layer_vertical() (nmcog.spinnaker.discriminate.BuonomanoMerzenich.BuoMerz method) plot_specific() (nmcog.spinnaker.associate.neal3way.NEAL3Way method) printCogMapNets() (nmcog.spinnaker.cognitivemap.nealmentalmap.placecellsysClass.PlaceCellSystemClass method) printPklSpikes() (nmcog.spinnaker.associate.nealassoc.make3Assoc.NeuralThreeAssocClass method) printResults() (nmcog.spinnaker.specialfunction.neal.timerClass.TimerClass method) printSpikes() (nmcog.spinnaker.associate.nealassoc.make3Assoc.NeuralThreeAssocClass method)

R

readInheritanceFile() (nmcog.spinnaker.associate.nealassoc.readInheritanceFile.InheritanceReaderClass method) readIsAs() (nmcog.spinnaker.associate.nealassoc.readInheritanceFile.InheritanceReaderClass method) readUnitFile() (nmcog.spinnaker.associate.nealassoc.readUnitFile.UnitReaderClass method)

readUnits() (nmcog.spinnaker.associate.nealassoc.readInheritanceFile.InheritanceReaderClass method) (nmcog.spinnaker.associate.nealassoc.readUnitFile.UnitReaderClass method) retrieveObjectPrimesPlaceBind() (nmcog.spinnaker.cognitivemap.nealmentalmap.placecellsysClass.PlaceCellSystemClass method) retrievePlacePrimesObjectBind() (nmcog.spinnaker.cognitivemap.nealmentalmap.placecellsysClass.PlaceCellSystemClass method)

S

sameProjectionType() (nmcog.spinnaker.specialfunction.neal.nealCoverClass.NealCoverFunctions method) setRecord() (nmcog.spinnaker.associate.nealassoc.make3Assoc.NeuralThreeAssocClass method) (nmcog.spinnaker.associate.nealassoc.makeInheritanceHier.NeuralInheritanceClass method) setup_inputchannel() (nmcog.spinnaker.discriminate.BuonomanoMerzenich.BuoMerz method) setupCogMapRecording() (nmcog.spinnaker.cognitivemap.nealmentalmap.placecellsysClass.PlaceCellSystemClass method) setupObjectPlaceFacts() (nmcog.spinnaker.cognitivemap.nealmentalmap.placecellsysClass.PlaceCellSystemClass method) setupRecording() (nmcog.spinnaker.specialfunction.neal.timerClass.TimerClass method) sourceStartsAutomaton() (nmcog.spinnaker.cognitivemap.nealmentalmap.placecellsysClass.PlaceCellSystemClass method) sourceTurnOnRetrieveObjectFromPlace() (nmcog.spinnaker.cognitivemap.nealmentalmap.placecellsysClass.PlaceCellSystemClass method) sourceTurnOnRetrievePlaceFromObject() (nmcog.spinnaker.cognitivemap.nealmentalmap.placecellsysClass.PlaceCellSystemClass method) sourceTurnsOffObject() (nmcog.spinnaker.cognitivemap.nealmentalmap.placecellsysClass.PlaceCellSystemClass method) sourceTurnsOffPlace() (nmcog.spinnaker.cognitivemap.nealmentalmap.placecellsysClass.PlaceCellSystemClass method) sourceTurnsOnBind() (nmcog.spinnaker.cognitivemap.nealmentalmap.placecellsysClass.PlaceCellSystemClass method) sourceTurnsOnObject() (nmcog.spinnaker.cognitivemap.nealmentalmap.placecellsysClass.PlaceCellSystemClass method) sourceTurnsOnObjectOn() (nmcog.spinnaker.cognitivemap.nealmentalmap.placecellsysClass.PlaceCellSystemClass method) sourceTurnsOnObjectQuery() (nmcog.spinnaker.cognitivemap.nealmentalmap.placecellsysClass.PlaceCellSystemClass method) sourceTurnsOnPlace() (nmcog.spinnaker.cognitivemap.nealmentalmap.placecellsysClass.PlaceCellSystemClass method) sourceTurnsOnPlaceOn() (nmcog.spinnaker.cognitivemap.nealmentalmap.placecellsysClass.PlaceCellSystemClass method) sourceTurnsOnPlaceQuery() (nmcog.spinnaker.cognitivemap.nealmentalmap.placecellsysClass.PlaceCellSystemClass method) stateHalfStartsTimer() (nmcog.spinnaker.specialfunction.neal.timerClass.TimerClass method) stateHalfTurnsOffState() (nmcog.spinnaker.specialfunction.neal.stateMachineClass.FSAHelperFunctions method)

stateHalfTurnsOnOneNueron() (nmcog.spinnaker.specialfunction.neal.stateMachineClass.FSAHelperFunctions method) stateHalfTurnsOnState() (nmcog.spinnaker.specialfunction.neal.stateMachineClass.FSAHelperFunctions method) stateInhibitsOneNeuron() (nmcog.spinnaker.specialfunction.neal.stateMachineClass.FSAHelperFunctions method) stateInhibitsState() (nmcog.spinnaker.specialfunction.neal.stateMachineClass.FSAHelperFunctions method) statePreventsObjectOutput() (nmcog.spinnaker.cognitivemap.nealmentalmap.placecellsysClass.PlaceCellSystemClass method) statePreventsOutput() (nmcog.spinnaker.cognitivemap.nealmentalmap.placecellsysClass.PlaceCellSystemClass method) statePreventsPlaceOutput() (nmcog.spinnaker.cognitivemap.nealmentalmap.placecellsysClass.PlaceCellSystemClass method) stateStartsTimer() (nmcog.spinnaker.specialfunction.neal.timerClass.TimerClass method) stateStimulatesOneNeuron() (nmcog.spinnaker.specialfunction.neal.stateMachineClass.FSAHelperFunctions method) stateStimulatesState() (nmcog.spinnaker.specialfunction.neal.stateMachineClass.FSAHelperFunctions method) stateStopsDone() (nmcog.spinnaker.cognitivemap.nealmentalmap.placecellsysClass.PlaceCellSystemClass method) stateStopsObjectDone() (nmcog.spinnaker.cognitivemap.nealmentalmap.placecellsysClass.PlaceCellSystemClass method) stateStopsPlaceDone() (nmcog.spinnaker.cognitivemap.nealmentalmap.placecellsysClass.PlaceCellSystemClass method) stateStopsTimer() (nmcog.spinnaker.specialfunction.neal.timerClass.TimerClass method) stateTurnsOffState() (nmcog.spinnaker.specialfunction.neal.stateMachineClass.FSAHelperFunctions method) stateTurnsOnOneNeuron() (nmcog.spinnaker.specialfunction.neal.stateMachineClass.FSAHelperFunctions method) stateTurnsOnOneRBSNeuron() (nmcog.spinnaker.specialfunction.neal.stateMachineClass.FSAHelperFunctions method) stateTurnsOnState() (nmcog.spinnaker.specialfunction.neal.stateMachineClass.FSAHelperFunctions method) stateTurnsOnStateSlow() (nmcog.spinnaker.specialfunction.neal.stateMachineClass.FSAHelperFunctions method) stimulateStateFromSpikeSource() (nmcog.spinnaker.specialfunction.neal.stateMachineClass.FSAHelperFunctions method) stopPlaceAndObjectBind() (nmcog.spinnaker.cognitivemap.nealmentalmap.placecellsysClass.PlaceCellSystemClass method)

T

test3StateFSA() (nmcog.spinnaker.specialfunction.neal.stateMachineClass.FSAHelperFunctions method) testCreateNeurons() (nmcog.spinnaker.specialfunction.neal.stateMachineClass.FSAHelperFunctions method) testCreateTwoInputs() (nmcog.spinnaker.specialfunction.neal.stateMachineClass.FSAHelperFunctions method) testInit() (nmcog.spinnaker.specialfunction.neal.stateMachineClass.FSAHelperFunctions method) testPrintPklSpikes() (nmcog.spinnaker.specialfunction.neal.stateMachineClass.FSAHelperFunctions method) testPrintResults() (nmcog.spinnaker.specialfunction.neal.stateMachineClass.FSAHelperFunctions method) testRunFSA() (nmcog.spinnaker.specialfunction.neal.stateMachineClass.FSAHelperFunctions method) testSetupRecording() (nmcog.spinnaker.specialfunction.neal.stateMachineClass.FSAHelperFunctions method)

timerActivatesState() (nmcog.spinnaker.specialfunction.neal.timerClass.TimerClass method) TimerClass (class in nmcog.spinnaker.specialfunction.neal.timerClass) timerPreventsState() (nmcog.spinnaker.specialfunction.neal.timerClass.TimerClass method) timerStartsState() (nmcog.spinnaker.specialfunction.neal.timerClass.TimerClass method) turnOffOneNeuronFromSpikeSource() (nmcog.spinnaker.specialfunction.neal.stateMachineClass.FSAHelperFunctions method) turnOffStateFromSpikeSource() (nmcog.spinnaker.specialfunction.neal.stateMachineClass.FSAHelperFunctions method) turnOnOneNeuronFromSpikeSource() (nmcog.spinnaker.specialfunction.neal.stateMachineClass.FSAHelperFunctions method) turnOnStateFromSpikeSource() (nmcog.spinnaker.specialfunction.neal.stateMachineClass.FSAHelperFunctions method)

U

UnitReaderClass (class in nmcog.spinnaker.associate.nealassoc.readUnitFile)