{ "cells": [ { "cell_type": "markdown", "metadata": {}, "source": [ "## Import a cognitive function" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "##### `from nmcog.spinnaker.discriminate import BuoMerz`" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Run it\n", "For this example we are passing one or more stimulus." ] }, { "cell_type": "code", "execution_count": 3, "metadata": {}, "outputs": [ { "name": "stderr", "output_type": "stream", "text": [ "2020-03-24 10:48:47 INFO: Read cfg files: /home/jovyan/sPyNNaker/lib/python3.6/site-packages/spinn_front_end_common/interface/spinnaker.cfg, /home/jovyan/sPyNNaker/lib/python3.6/site-packages/spynnaker/pyNN/spynnaker.cfg, /home/jovyan/.spynnaker.cfg\n", "2020-03-24 10:48:47 INFO: Will search these locations for binaries: /home/jovyan/sPyNNaker/lib/python3.6/site-packages/spinn_front_end_common/common_model_binaries : /home/jovyan/sPyNNaker/lib/python3.6/site-packages/spynnaker/pyNN/model_binaries\n", "2020-03-24 10:48:47 WARNING: /home/jovyan/reports has 14 old reports that have not been closed\n", "2020-03-24 10:48:47 WARNING: /home/jovyan/application_generated_data_files has 14 old reports that have not been closed\n", "2020-03-24 10:48:47 INFO: Setting time scale factor to 1.\n", "2020-03-24 10:48:47 INFO: Setting machine time step to 1000 micro-seconds.\n", "2020-03-24 10:48:47 WARNING: record(\"all\") is non-standard PyNN, and therefore may not be portable to other simulators.\n", "2020-03-24 10:48:47 WARNING: You are trying to record the excitatory conductance from a model which does not use conductance input. You will receive current measurements instead.\n", "2020-03-24 10:48:47 WARNING: You are trying to record the inhibitory conductance from a model which does not use conductance input. You will receive current measurements instead.\n", "2020-03-24 10:48:47 INFO: Simulating for 130 1.0ms timesteps using a hardware timestep of 1000us\n", "2020-03-24 10:48:47 INFO: Starting execution process\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "['/home/jovyan/sPyNNaker/lib/python3.6/site-packages/spinn_front_end_common/interface/spinnaker.cfg', '/home/jovyan/sPyNNaker/lib/python3.6/site-packages/spynnaker/pyNN/spynnaker.cfg', '/home/jovyan/.spynnaker.cfg']\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "2020-03-24 10:48:53 INFO: Time 0:00:05.941696 taken by SpallocMaxMachineGenerator\n", "Pre allocating resources for Extra Monitor support vertices\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:49:05 INFO: Time 0:00:12.287796 taken by PreAllocateResourcesForExtraMonitorSupport\n", "Partitioning graph vertices\n", "|0% 50% 100%|\n", " ============================================================\n", "Partitioning graph edges\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:49:18 INFO: Time 0:00:12.579328 taken by PartitionAndPlacePartitioner\n", "Created spalloc job 5318556\n", "2020-03-24 10:49:18 INFO: Created spalloc job 5318556\n", "Waiting for board power commands to complete.\n", "2020-03-24 10:49:18 INFO: Waiting for board power commands to complete.\n", "2020-03-24 10:49:23 INFO: Time 0:00:05.056944 taken by SpallocAllocator\n", "2020-03-24 10:49:23 INFO: Creating transceiver for 10.11.199.129\n", "2020-03-24 10:49:23 INFO: Working out if machine is booted\n", "2020-03-24 10:49:27 INFO: Attempting to boot machine\n", "2020-03-24 10:49:33 INFO: Found board with version [Version: SC&MP 3.2.5 at SpiNNaker:0:0:0 (built Thu Aug 1 08:15:06 2019)]\n", "2020-03-24 10:49:33 INFO: Machine communication successful\n", "2020-03-24 10:49:33 INFO: Detected a machine on IP address 10.11.199.129 which has 853 cores and 120.0 links\n", "2020-03-24 10:49:33 INFO: Time 0:00:09.653708 taken by MachineGenerator\n", "Generating partitioner report\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:49:33 INFO: Time 0:00:00.018688 taken by PartitionerReport\n", "2020-03-24 10:49:33 INFO: Time 0:00:00.003908 taken by NetworkSpecificationReport\n", "Allocating virtual identifiers\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:49:33 INFO: Time 0:00:00.060067 taken by MallocBasedChipIDAllocator\n", "Inserting extra monitors into graphs\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:49:33 INFO: Time 0:00:00.054976 taken by InsertExtraMonitorVerticesToGraphs\n", "Writing the board chip report\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:49:33 INFO: Time 0:00:00.028323 taken by BoardChipReport\n", "Filtering edges\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:49:33 INFO: Time 0:00:00.193757 taken by GraphEdgeFilter\n", "Placing graph vertices\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:49:33 INFO: Time 0:00:00.346437 taken by OneToOnePlacer\n", "Inserting edges between vertices which require FR speed up functionality.\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:49:34 INFO: Time 0:00:00.309749 taken by InsertEdgesToExtraMonitorFunctionality\n", "Generating routing tables for data in system processes\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:49:34 INFO: Time 0:00:00.049146 taken by DataInMulticastRoutingGenerator\n", "Generating fixed router routes\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:49:34 INFO: Time 0:00:00.040123 taken by FixedRouteRouter\n", "Generating placement report\n", "|0% 50% 100%|\n", " ============================================================\n", "Generating placement by core report\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:49:34 INFO: Time 0:00:00.587320 taken by PlacerReportWithApplicationGraph\n", "Routing\n", "|0% 50% 100%|\n", " ============================================================\n", "\n", "2020-03-24 10:49:35 INFO: Time 0:00:00.116644 taken by NerRoute\n", "Discovering tags\n", "|0% 50% 100%|\n", " ============================================================\n", "Allocating tags\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:49:35 INFO: Time 0:00:00.120256 taken by BasicTagAllocator\n", "Reporting Tags\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:49:35 INFO: Time 0:00:00.016855 taken by TagReport\n", "Getting number of keys required by each edge using application graph\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:49:35 INFO: Time 0:00:00.081841 taken by EdgeToNKeysMapper\n", "Getting constraints for application graph\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:49:35 INFO: Time 0:00:00.098605 taken by ProcessPartitionConstraints\n", "Allocating routing keys\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:49:35 INFO: Time 0:00:00.032643 taken by MallocBasedRoutingInfoAllocator\n", "Generating Routing info report\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:49:35 INFO: Time 0:00:00.087959 taken by routingInfoReports\n", "Generating routing tables\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:49:35 INFO: Time 0:00:00.118971 taken by BasicRoutingTableGenerator\n", "Finding executable start types\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:49:35 INFO: Time 0:00:00.122429 taken by LocateExecutableStartType\n", "Initialising buffers\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:49:35 INFO: Time 0:00:00.177702 taken by BufferManagerCreator\n", "Generating data specifications\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:49:36 INFO: Time 0:00:00.455517 taken by SpynnakerDataSpecificationWriter\n", "Preparing Routing Tables\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:49:36 INFO: Time 0:00:00.025890 taken by RoutingSetup\n", "Finding binaries\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:49:36 INFO: Time 0:00:00.079775 taken by GraphBinaryGatherer\n", "Running routing table compression on chip\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:49:41 INFO: Time 0:00:04.559903 taken by MundyOnChipRouterCompression\n", "Generating Router table report\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:49:41 INFO: Time 0:00:00.016591 taken by unCompressedRoutingTableReports\n", "loading fixed routes\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:49:41 INFO: Time 0:00:00.085559 taken by LoadFixedRoutes\n", "Executing data specifications and loading data for system vertices\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:49:41 INFO: Time 0:00:00.276217 taken by HostExecuteSystemDataSpecification\n", "Loading system executables onto the machine\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:49:47 INFO: Time 0:00:05.759816 taken by LoadSystemExecutableImages\n", "Clearing tags\n", "|0% 50% 100%|\n", " ============================================================\n", "Loading Tags\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:49:47 INFO: Time 0:00:00.045335 taken by TagsLoader\n", "Writing data\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:49:47 INFO: Time 0:00:00.072403 taken by WriteMemoryIOData\n", "Executing data specifications and loading data for application vertices\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:49:49 INFO: Time 0:00:02.329880 taken by HostExecuteApplicationDataSpecification\n", "Expanding Synapses\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:49:53 INFO: Time 0:00:03.947820 taken by SynapseExpander\n", "Writing fixed route report\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:49:53 INFO: Time 0:00:00.098872 taken by FixedRouteFromMachineReport\n", "Loading executables onto the machine\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:50:00 INFO: Time 0:00:06.876469 taken by LoadApplicationExecutableImages\n", "Reading Routing Tables from Machine\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:50:00 INFO: Time 0:00:00.024519 taken by RoutingTableFromMachineReport\n", "Generating compressed router table report\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:50:00 INFO: Time 0:00:00.016589 taken by compressedRoutingTableReports\n", "Generating comparison of router table report\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:50:00 INFO: Time 0:00:00.016750 taken by comparisonOfRoutingTablesReport\n", "2020-03-24 10:50:00 INFO: Running for 1 steps for a total of 130.0ms\n", "2020-03-24 10:50:00 INFO: Run 1 of 1\n", "Generating SDRAM usage report\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:50:00 INFO: Time 0:00:00.142856 taken by SdramUsageReportPerChip\n", "Updating run time\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:50:00 INFO: Time 0:00:00.048431 taken by ChipRuntimeUpdater\n", "2020-03-24 10:50:00 INFO: Time 0:00:00.000384 taken by DatabaseInterface\n", "2020-03-24 10:50:00 INFO: ** Notifying external sources that the database is ready for reading **\n", "2020-03-24 10:50:00 INFO: Time 0:00:00.008640 taken by NotificationProtocol\n", "2020-03-24 10:50:00 INFO: *** Running simulation... *** \n", "Loading buffers\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:50:01 INFO: ** Awaiting for a response from an external source to state its ready for the simulation to start **\n", "2020-03-24 10:50:01 INFO: ** Sending start / resume message to external sources to state the simulation has started or resumed. **\n", "2020-03-24 10:50:01 INFO: ** Awaiting for a response from an external source to state its ready for the simulation to start **\n", "2020-03-24 10:50:01 INFO: Application started; waiting 0.23s for it to stop\n", "2020-03-24 10:50:01 INFO: ** Sending pause / stop message to external sources to state the simulation has been paused or stopped. **\n", "2020-03-24 10:50:01 INFO: Time 0:00:00.405460 taken by ApplicationRunner\n", "Extracting buffers from the last run\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:50:01 INFO: Time 0:00:00.535485 taken by BufferExtractor\n", "Getting provenance data from machine graph\n", "|0% 50% 100%|\n", " ============================================================\n", "Getting provenance data from application graph\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:50:02 INFO: Time 0:00:00.169600 taken by GraphProvenanceGatherer\n", "Getting provenance data\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:50:02 INFO: Time 0:00:00.088399 taken by PlacementsProvenanceGatherer\n", "Getting Router Provenance\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:50:02 INFO: Time 0:00:00.091174 taken by RouterProvenanceGatherer\n", "Getting profile data\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:50:02 INFO: Time 0:00:00.102317 taken by ProfileDataGatherer\n", "Getting spikes for input1\n", "|0% 50% 100%|\n", " ============================================================\n", "Getting v for input1\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:50:02 WARNING: Warning getting data on a whole population when selective recording is active will result in only the requested neurons being returned in numerical order and without repeats.\n", "Getting spikes for ex4\n", "|0% 50% 100%|\n", " ============================================================\n", "Getting v for ex4\n", "|0% 50% 100%|\n", " ============================================================\n", "Getting spikes for inh4\n", "|0% 50% 100%|\n", " ============================================================\n", "Getting v for inh4\n", "|0% 50% 100%|\n", " ============================================================\n", "Getting spikes for ex3\n", "|0% 50% 100%|\n", " ============================================================\n", "Getting v for ex3\n", "|0% 50% 100%|\n", " ============================================================\n", "Getting spikes for inh3\n", "|0% 50% 100%|\n", " ============================================================\n", "Getting v for inh3\n", "|0% 50% 100%|\n", " ============================================================\n", "Getting spikes for output_for_80\n", "|0% 50% 100%|\n", " ============================================================\n", "Getting spikes for output_for_130\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:50:02 WARNING: A Timer tick callback was still executing when the next timer tick callback was fired off for ex3:0:199 on 0, 0, 6, 8 times. This is a sign of the system being overloaded and therefore the results are likely incorrect. Please increase the machine time step or time_scale_factor or decrease the number of neurons per core\n", "2020-03-24 10:50:02 WARNING: A Timer tick callback was still executing when the next timer tick callback was fired off for ex4:0:119 on 0, 0, 7, 3 times. This is a sign of the system being overloaded and therefore the results are likely incorrect. Please increase the machine time step or time_scale_factor or decrease the number of neurons per core\n", "2020-03-24 10:50:02 INFO: Read cfg files: /home/jovyan/sPyNNaker/lib/python3.6/site-packages/spinn_front_end_common/interface/spinnaker.cfg, /home/jovyan/sPyNNaker/lib/python3.6/site-packages/spynnaker/pyNN/spynnaker.cfg, /home/jovyan/.spynnaker.cfg\n", "2020-03-24 10:50:02 INFO: Will search these locations for binaries: /home/jovyan/sPyNNaker/lib/python3.6/site-packages/spinn_front_end_common/common_model_binaries : /home/jovyan/sPyNNaker/lib/python3.6/site-packages/spynnaker/pyNN/model_binaries\n", "2020-03-24 10:50:02 WARNING: /home/jovyan/reports has 14 old reports that have not been closed\n", "2020-03-24 10:50:02 WARNING: /home/jovyan/application_generated_data_files has 14 old reports that have not been closed\n", "2020-03-24 10:50:02 INFO: Setting time scale factor to 1.\n", "2020-03-24 10:50:02 INFO: Setting machine time step to 1000 micro-seconds.\n", "2020-03-24 10:50:02 INFO: Simulating for 180 1.0ms timesteps using a hardware timestep of 1000us\n", "2020-03-24 10:50:02 INFO: Starting execution process\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "['/home/jovyan/sPyNNaker/lib/python3.6/site-packages/spinn_front_end_common/interface/spinnaker.cfg', '/home/jovyan/sPyNNaker/lib/python3.6/site-packages/spynnaker/pyNN/spynnaker.cfg', '/home/jovyan/.spynnaker.cfg']\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "2020-03-24 10:50:08 INFO: Time 0:00:05.781284 taken by SpallocMaxMachineGenerator\n", "Pre allocating resources for Extra Monitor support vertices\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:50:20 INFO: Time 0:00:11.597917 taken by PreAllocateResourcesForExtraMonitorSupport\n", "Partitioning graph vertices\n", "|0% 50% 100%|\n", " ============================================================\n", "Partitioning graph edges\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:50:29 INFO: Time 0:00:08.838890 taken by PartitionAndPlacePartitioner\n", "Created spalloc job 5318557\n", "2020-03-24 10:50:29 INFO: Created spalloc job 5318557\n", "Waiting for board power commands to complete.\n", "2020-03-24 10:50:29 INFO: Waiting for board power commands to complete.\n", "2020-03-24 10:50:34 INFO: Time 0:00:05.051142 taken by SpallocAllocator\n", "2020-03-24 10:50:34 INFO: Creating transceiver for 10.11.199.129\n", "2020-03-24 10:50:34 INFO: Working out if machine is booted\n", "2020-03-24 10:50:38 INFO: Attempting to boot machine\n", "2020-03-24 10:50:43 INFO: Found board with version [Version: SC&MP 3.2.5 at SpiNNaker:0:0:0 (built Thu Aug 1 08:15:06 2019)]\n", "2020-03-24 10:50:43 INFO: Machine communication successful\n", "2020-03-24 10:50:43 INFO: Detected a machine on IP address 10.11.199.129 which has 854 cores and 120.0 links\n", "2020-03-24 10:50:43 INFO: Time 0:00:09.663257 taken by MachineGenerator\n", "Generating partitioner report\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:50:43 INFO: Time 0:00:00.016407 taken by PartitionerReport\n", "2020-03-24 10:50:43 INFO: Time 0:00:00.002188 taken by NetworkSpecificationReport\n", "Allocating virtual identifiers\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:50:43 INFO: Time 0:00:00.090868 taken by MallocBasedChipIDAllocator\n", "Inserting extra monitors into graphs\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:50:44 INFO: Time 0:00:00.231338 taken by InsertExtraMonitorVerticesToGraphs\n", "Writing the board chip report\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:50:44 INFO: Time 0:00:00.016503 taken by BoardChipReport\n", "Filtering edges\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:50:44 INFO: Time 0:00:00.149662 taken by GraphEdgeFilter\n", "Placing graph vertices\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:50:44 INFO: Time 0:00:00.111254 taken by OneToOnePlacer\n", "Inserting edges between vertices which require FR speed up functionality.\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:50:44 INFO: Time 0:00:00.113242 taken by InsertEdgesToExtraMonitorFunctionality\n", "Generating routing tables for data in system processes\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:50:44 INFO: Time 0:00:00.018587 taken by DataInMulticastRoutingGenerator\n", "Generating fixed router routes\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:50:44 INFO: Time 0:00:00.012549 taken by FixedRouteRouter\n", "Generating placement report\n", "|0% 50% 100%|\n", " ============================================================\n", "Generating placement by core report\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:50:44 INFO: Time 0:00:00.178420 taken by PlacerReportWithApplicationGraph\n", "Routing\n", "|0% 50% 100%|\n", " ============================================================\n", "\n", "2020-03-24 10:50:44 INFO: Time 0:00:00.102568 taken by NerRoute\n", "Discovering tags\n", "|0% 50% 100%|\n", " ============================================================\n", "Allocating tags\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:50:45 INFO: Time 0:00:00.137179 taken by BasicTagAllocator\n", "Reporting Tags\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:50:45 INFO: Time 0:00:00.024161 taken by TagReport\n", "Getting number of keys required by each edge using application graph\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:50:45 INFO: Time 0:00:00.272220 taken by EdgeToNKeysMapper\n", "Getting constraints for application graph\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:50:45 INFO: Time 0:00:00.275628 taken by ProcessPartitionConstraints\n", "Allocating routing keys\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:50:45 INFO: Time 0:00:00.029151 taken by MallocBasedRoutingInfoAllocator\n", "Generating Routing info report\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:50:45 INFO: Time 0:00:00.145139 taken by routingInfoReports\n", "Generating routing tables\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:50:45 INFO: Time 0:00:00.082176 taken by BasicRoutingTableGenerator\n", "Finding executable start types\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:50:46 INFO: Time 0:00:00.154161 taken by LocateExecutableStartType\n", "Initialising buffers\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:50:46 INFO: Time 0:00:00.125105 taken by BufferManagerCreator\n", "Generating data specifications\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:50:46 INFO: Time 0:00:00.296942 taken by SpynnakerDataSpecificationWriter\n", "Preparing Routing Tables\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:50:46 INFO: Time 0:00:00.013669 taken by RoutingSetup\n", "Finding binaries\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:50:46 INFO: Time 0:00:00.040002 taken by GraphBinaryGatherer\n", "Running routing table compression on chip\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:50:51 INFO: Time 0:00:04.533472 taken by MundyOnChipRouterCompression\n", "Generating Router table report\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:50:51 INFO: Time 0:00:00.008616 taken by unCompressedRoutingTableReports\n", "loading fixed routes\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:50:51 INFO: Time 0:00:00.042230 taken by LoadFixedRoutes\n", "Executing data specifications and loading data for system vertices\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:50:51 INFO: Time 0:00:00.218263 taken by HostExecuteSystemDataSpecification\n", "Loading system executables onto the machine\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:50:57 INFO: Time 0:00:05.747173 taken by LoadSystemExecutableImages\n", "Clearing tags\n", "|0% 50% 100%|\n", " ============================================================\n", "Loading Tags\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:50:57 INFO: Time 0:00:00.029515 taken by TagsLoader\n", "Writing data\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:50:57 INFO: Time 0:00:00.035907 taken by WriteMemoryIOData\n", "Executing data specifications and loading data for application vertices\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:50:57 INFO: Time 0:00:00.317438 taken by HostExecuteApplicationDataSpecification\n", "Expanding Synapses\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:51:01 INFO: Time 0:00:03.914931 taken by SynapseExpander\n", "Writing fixed route report\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:51:01 INFO: Time 0:00:00.066870 taken by FixedRouteFromMachineReport\n", "Loading executables onto the machine\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:51:08 INFO: Time 0:00:06.873900 taken by LoadApplicationExecutableImages\n", "Reading Routing Tables from Machine\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:51:08 INFO: Time 0:00:00.020896 taken by RoutingTableFromMachineReport\n", "Generating compressed router table report\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:51:08 INFO: Time 0:00:00.011272 taken by compressedRoutingTableReports\n", "Generating comparison of router table report\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:51:08 INFO: Time 0:00:00.010501 taken by comparisonOfRoutingTablesReport\n", "2020-03-24 10:51:08 INFO: Running for 1 steps for a total of 180.0ms\n", "2020-03-24 10:51:08 INFO: Run 1 of 1\n", "Generating SDRAM usage report\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:51:08 INFO: Time 0:00:00.102379 taken by SdramUsageReportPerChip\n", "Updating run time\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:51:08 INFO: Time 0:00:00.036685 taken by ChipRuntimeUpdater\n", "2020-03-24 10:51:08 INFO: Time 0:00:00.000431 taken by DatabaseInterface\n", "2020-03-24 10:51:08 INFO: ** Notifying external sources that the database is ready for reading **\n", "2020-03-24 10:51:08 INFO: Time 0:00:00.004623 taken by NotificationProtocol\n", "2020-03-24 10:51:08 INFO: *** Running simulation... *** \n", "Loading buffers\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:51:08 INFO: ** Awaiting for a response from an external source to state its ready for the simulation to start **\n", "2020-03-24 10:51:08 INFO: ** Sending start / resume message to external sources to state the simulation has started or resumed. **\n", "2020-03-24 10:51:08 INFO: ** Awaiting for a response from an external source to state its ready for the simulation to start **\n", "2020-03-24 10:51:08 INFO: Application started; waiting 0.28s for it to stop\n", "2020-03-24 10:51:09 INFO: ** Sending pause / stop message to external sources to state the simulation has been paused or stopped. **\n", "2020-03-24 10:51:09 INFO: Time 0:00:00.426150 taken by ApplicationRunner\n", "Extracting buffers from the last run\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:51:09 INFO: Time 0:00:00.639263 taken by BufferExtractor\n", "Getting provenance data from machine graph\n", "|0% 50% 100%|\n", " ============================================================\n", "Getting provenance data from application graph\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:51:09 INFO: Time 0:00:00.142526 taken by GraphProvenanceGatherer\n", "Getting provenance data\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:51:10 INFO: Time 0:00:00.115498 taken by PlacementsProvenanceGatherer\n", "Getting Router Provenance\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:51:10 INFO: Time 0:00:00.098745 taken by RouterProvenanceGatherer\n", "Getting profile data\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:51:10 INFO: Time 0:00:00.280043 taken by ProfileDataGatherer\n", "Getting spikes for input1\n", "|0% 50% 100%|\n", " ============================================================\n", "Getting v for input1\n", "|0% 50% 100%|\n", " ============================================================\n", "Getting spikes for ex4\n", "|0% 50% 100%|\n", " ============================================================\n", "Getting v for ex4\n", "|0% 50% 100%|\n", " ============================================================\n", "Getting spikes for inh4\n", "|0% 50% 100%|\n", " ============================================================\n", "Getting v for inh4\n", "|0% 50% 100%|\n", " ============================================================\n", "Getting spikes for ex3\n", "|0% 50% 100%|\n", " ============================================================\n", "Getting v for ex3\n", "|0% 50% 100%|\n", " ============================================================\n", "Getting spikes for inh3\n", "|0% 50% 100%|\n", " ============================================================\n", "Getting v for inh3\n", "|0% 50% 100%|\n", " ============================================================\n", "Getting spikes for output_for_80\n", "|0% 50% 100%|\n", " ============================================================\n", "Getting spikes for output_for_130\n", "|0% 50% 100%|\n", " ============================================================\n", "2020-03-24 10:51:11 WARNING: A Timer tick callback was still executing when the next timer tick callback was fired off for ex3:0:199 on 0, 0, 6, 9 times. This is a sign of the system being overloaded and therefore the results are likely incorrect. Please increase the machine time step or time_scale_factor or decrease the number of neurons per core\n" ] } ], "source": [ "#x = BuoMerz([80])\n", "x = BuoMerz([80, 130])\n", "#x = BuoMerz([80, 130, 180, 230, 280])" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Get simulation results." ] }, { "cell_type": "code", "execution_count": 4, "metadata": {}, "outputs": [], "source": [ "y = x.get_results()" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Visualize\n", "\n", "For this example of `BuoMerz` function which performs temporal processing let us visualize the neuron activity from populations of the output layer for respective stimulus." ] }, { "cell_type": "code", "execution_count": 5, "metadata": {}, "outputs": [ { "data": { "application/javascript": [ "/* Put everything inside the global mpl namespace */\n", "window.mpl = {};\n", "\n", "\n", "mpl.get_websocket_type = function() {\n", " if (typeof(WebSocket) !== 'undefined') {\n", " return WebSocket;\n", " } else if (typeof(MozWebSocket) !== 'undefined') {\n", " return MozWebSocket;\n", " } else {\n", " alert('Your browser does not have WebSocket support. ' +\n", " 'Please try Chrome, Safari or Firefox ≥ 6. ' +\n", " 'Firefox 4 and 5 are also supported but you ' +\n", " 'have to enable WebSockets in about:config.');\n", " };\n", "}\n", "\n", "mpl.figure = function(figure_id, websocket, ondownload, parent_element) {\n", " this.id = figure_id;\n", "\n", " this.ws = websocket;\n", "\n", " this.supports_binary = (this.ws.binaryType != undefined);\n", "\n", " if (!this.supports_binary) {\n", " var warnings = document.getElementById(\"mpl-warnings\");\n", " if (warnings) {\n", " warnings.style.display = 'block';\n", " warnings.textContent = (\n", " \"This browser does not support binary websocket messages. \" +\n", " \"Performance may be slow.\");\n", " }\n", " }\n", "\n", " this.imageObj = new Image();\n", "\n", " this.context = undefined;\n", " this.message = undefined;\n", " this.canvas = undefined;\n", " this.rubberband_canvas = undefined;\n", " this.rubberband_context = undefined;\n", " this.format_dropdown = undefined;\n", "\n", " this.image_mode = 'full';\n", "\n", " this.root = $('
');\n", " this._root_extra_style(this.root)\n", " this.root.attr('style', 'display: inline-block');\n", "\n", " $(parent_element).append(this.root);\n", "\n", " this._init_header(this);\n", " this._init_canvas(this);\n", " this._init_toolbar(this);\n", "\n", " var fig = this;\n", "\n", " this.waiting = false;\n", "\n", " this.ws.onopen = function () {\n", " fig.send_message(\"supports_binary\", {value: fig.supports_binary});\n", " fig.send_message(\"send_image_mode\", {});\n", " if (mpl.ratio != 1) {\n", " fig.send_message(\"set_dpi_ratio\", {'dpi_ratio': mpl.ratio});\n", " }\n", " fig.send_message(\"refresh\", {});\n", " }\n", "\n", " this.imageObj.onload = function() {\n", " if (fig.image_mode == 'full') {\n", " // Full images could contain transparency (where diff images\n", " // almost always do), so we need to clear the canvas so that\n", " // there is no ghosting.\n", " fig.context.clearRect(0, 0, fig.canvas.width, fig.canvas.height);\n", " }\n", " fig.context.drawImage(fig.imageObj, 0, 0);\n", " };\n", "\n", " this.imageObj.onunload = function() {\n", " fig.ws.close();\n", " }\n", "\n", " this.ws.onmessage = this._make_on_message_function(this);\n", "\n", " this.ondownload = ondownload;\n", "}\n", "\n", "mpl.figure.prototype._init_header = function() {\n", " var titlebar = $(\n", " '
');\n", " var titletext = $(\n", " '
');\n", " titlebar.append(titletext)\n", " this.root.append(titlebar);\n", " this.header = titletext[0];\n", "}\n", "\n", "\n", "\n", "mpl.figure.prototype._canvas_extra_style = function(canvas_div) {\n", "\n", "}\n", "\n", "\n", "mpl.figure.prototype._root_extra_style = function(canvas_div) {\n", "\n", "}\n", "\n", "mpl.figure.prototype._init_canvas = function() {\n", " var fig = this;\n", "\n", " var canvas_div = $('
');\n", "\n", " canvas_div.attr('style', 'position: relative; clear: both; outline: 0');\n", "\n", " function canvas_keyboard_event(event) {\n", " return fig.key_event(event, event['data']);\n", " }\n", "\n", " canvas_div.keydown('key_press', canvas_keyboard_event);\n", " canvas_div.keyup('key_release', canvas_keyboard_event);\n", " this.canvas_div = canvas_div\n", " this._canvas_extra_style(canvas_div)\n", " this.root.append(canvas_div);\n", "\n", " var canvas = $('');\n", " canvas.addClass('mpl-canvas');\n", " canvas.attr('style', \"left: 0; top: 0; z-index: 0; outline: 0\")\n", "\n", " this.canvas = canvas[0];\n", " this.context = canvas[0].getContext(\"2d\");\n", "\n", " var backingStore = this.context.backingStorePixelRatio ||\n", "\tthis.context.webkitBackingStorePixelRatio ||\n", "\tthis.context.mozBackingStorePixelRatio ||\n", "\tthis.context.msBackingStorePixelRatio ||\n", "\tthis.context.oBackingStorePixelRatio ||\n", "\tthis.context.backingStorePixelRatio || 1;\n", "\n", " mpl.ratio = (window.devicePixelRatio || 1) / backingStore;\n", "\n", " var rubberband = $('');\n", " rubberband.attr('style', \"position: absolute; left: 0; top: 0; z-index: 1;\")\n", "\n", " var pass_mouse_events = true;\n", "\n", " canvas_div.resizable({\n", " start: function(event, ui) {\n", " pass_mouse_events = false;\n", " },\n", " resize: function(event, ui) {\n", " fig.request_resize(ui.size.width, ui.size.height);\n", " },\n", " stop: function(event, ui) {\n", " pass_mouse_events = true;\n", " fig.request_resize(ui.size.width, ui.size.height);\n", " },\n", " });\n", "\n", " function mouse_event_fn(event) {\n", " if (pass_mouse_events)\n", " return fig.mouse_event(event, event['data']);\n", " }\n", "\n", " rubberband.mousedown('button_press', mouse_event_fn);\n", " rubberband.mouseup('button_release', mouse_event_fn);\n", " // Throttle sequential mouse events to 1 every 20ms.\n", " rubberband.mousemove('motion_notify', mouse_event_fn);\n", "\n", " rubberband.mouseenter('figure_enter', mouse_event_fn);\n", " rubberband.mouseleave('figure_leave', mouse_event_fn);\n", "\n", " canvas_div.on(\"wheel\", function (event) {\n", " event = event.originalEvent;\n", " event['data'] = 'scroll'\n", " if (event.deltaY < 0) {\n", " event.step = 1;\n", " } else {\n", " event.step = -1;\n", " }\n", " mouse_event_fn(event);\n", " });\n", "\n", " canvas_div.append(canvas);\n", " canvas_div.append(rubberband);\n", "\n", " this.rubberband = rubberband;\n", " this.rubberband_canvas = rubberband[0];\n", " this.rubberband_context = rubberband[0].getContext(\"2d\");\n", " this.rubberband_context.strokeStyle = \"#000000\";\n", "\n", " this._resize_canvas = function(width, height) {\n", " // Keep the size of the canvas, canvas container, and rubber band\n", " // canvas in synch.\n", " canvas_div.css('width', width)\n", " canvas_div.css('height', height)\n", "\n", " canvas.attr('width', width * mpl.ratio);\n", " canvas.attr('height', height * mpl.ratio);\n", " canvas.attr('style', 'width: ' + width + 'px; height: ' + height + 'px;');\n", "\n", " rubberband.attr('width', width);\n", " rubberband.attr('height', height);\n", " }\n", "\n", " // Set the figure to an initial 600x600px, this will subsequently be updated\n", " // upon first draw.\n", " this._resize_canvas(600, 600);\n", "\n", " // Disable right mouse context menu.\n", " $(this.rubberband_canvas).bind(\"contextmenu\",function(e){\n", " return false;\n", " });\n", "\n", " function set_focus () {\n", " canvas.focus();\n", " canvas_div.focus();\n", " }\n", "\n", " window.setTimeout(set_focus, 100);\n", "}\n", "\n", "mpl.figure.prototype._init_toolbar = function() {\n", " var fig = this;\n", "\n", " var nav_element = $('
');\n", " nav_element.attr('style', 'width: 100%');\n", " this.root.append(nav_element);\n", "\n", " // Define a callback function for later on.\n", " function toolbar_event(event) {\n", " return fig.toolbar_button_onclick(event['data']);\n", " }\n", " function toolbar_mouse_event(event) {\n", " return fig.toolbar_button_onmouseover(event['data']);\n", " }\n", "\n", " for(var toolbar_ind in mpl.toolbar_items) {\n", " var name = mpl.toolbar_items[toolbar_ind][0];\n", " var tooltip = mpl.toolbar_items[toolbar_ind][1];\n", " var image = mpl.toolbar_items[toolbar_ind][2];\n", " var method_name = mpl.toolbar_items[toolbar_ind][3];\n", "\n", " if (!name) {\n", " // put a spacer in here.\n", " continue;\n", " }\n", " var button = $('');\n", " button.click(method_name, toolbar_event);\n", " button.mouseover(tooltip, toolbar_mouse_event);\n", " nav_element.append(button);\n", " }\n", "\n", " // Add the status bar.\n", " var status_bar = $('');\n", " nav_element.append(status_bar);\n", " this.message = status_bar[0];\n", "\n", " // Add the close button to the window.\n", " var buttongrp = $('
');\n", " var button = $('');\n", " button.click(function (evt) { fig.handle_close(fig, {}); } );\n", " button.mouseover('Stop Interaction', toolbar_mouse_event);\n", " buttongrp.append(button);\n", " var titlebar = this.root.find($('.ui-dialog-titlebar'));\n", " titlebar.prepend(buttongrp);\n", "}\n", "\n", "mpl.figure.prototype._root_extra_style = function(el){\n", " var fig = this\n", " el.on(\"remove\", function(){\n", "\tfig.close_ws(fig, {});\n", " });\n", "}\n", "\n", "mpl.figure.prototype._canvas_extra_style = function(el){\n", " // this is important to make the div 'focusable\n", " el.attr('tabindex', 0)\n", " // reach out to IPython and tell the keyboard manager to turn it's self\n", " // off when our div gets focus\n", "\n", " // location in version 3\n", " if (IPython.notebook.keyboard_manager) {\n", " IPython.notebook.keyboard_manager.register_events(el);\n", " }\n", " else {\n", " // location in version 2\n", " IPython.keyboard_manager.register_events(el);\n", " }\n", "\n", "}\n", "\n", "mpl.figure.prototype._key_event_extra = function(event, name) {\n", " var manager = IPython.notebook.keyboard_manager;\n", " if (!manager)\n", " manager = IPython.keyboard_manager;\n", "\n", " // Check for shift+enter\n", " if (event.shiftKey && event.which == 13) {\n", " this.canvas_div.blur();\n", " event.shiftKey = false;\n", " // Send a \"J\" for go to next cell\n", " event.which = 74;\n", " event.keyCode = 74;\n", " manager.command_mode();\n", " manager.handle_keydown(event);\n", " }\n", "}\n", "\n", "mpl.figure.prototype.handle_save = function(fig, msg) {\n", " fig.ondownload(fig, null);\n", "}\n", "\n", "\n", "mpl.find_output_cell = function(html_output) {\n", " // Return the cell and output element which can be found *uniquely* in the notebook.\n", " // Note - this is a bit hacky, but it is done because the \"notebook_saving.Notebook\"\n", " // IPython event is triggered only after the cells have been serialised, which for\n", " // our purposes (turning an active figure into a static one), is too late.\n", " var cells = IPython.notebook.get_cells();\n", " var ncells = cells.length;\n", " for (var i=0; i= 3 moved mimebundle to data attribute of output\n", " data = data.data;\n", " }\n", " if (data['text/html'] == html_output) {\n", " return [cell, data, j];\n", " }\n", " }\n", " }\n", " }\n", "}\n", "\n", "// Register the function which deals with the matplotlib target/channel.\n", "// The kernel may be null if the page has been refreshed.\n", "if (IPython.notebook.kernel != null) {\n", " IPython.notebook.kernel.comm_manager.register_target('matplotlib', mpl.mpl_figure_comm);\n", "}\n" ], "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" }, { "data": { "text/html": [ "" ], "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "z1 = \"80\"\n", "z2 = \"130\"\n", "fig, ( (sp1), (sp2) ) = plt.subplots(2,1)\n", "\n", "clrs = ['C{}'.format(i) for i in range(5)] # [80, 130, 180, 230, 280]\n", "\n", "sp1.eventplot( y[z1][\"out\"][\"out\"+z1][\"spiketrains\"], colors=clrs[0] )\n", "sp2.eventplot( y[z2][\"out\"][\"out\"+z2][\"spiketrains\"], colors=clrs[1] )\n", "\n", "# legend\n", "z1_patch = mpatches.Patch(color=clrs[0], label=z1)\n", "z2_patch = mpatches.Patch(color=clrs[1], label=z2)\n", "\n", "\n", "sp1.margins(10,0.5)\n", "sp2.margins(10,0.5)\n", "\n", "sp1.set_yticks([])\n", "sp1.set(ylabel=\"output population-a\")\n", "sp2.set_yticks([])\n", "sp2.set(ylabel=\"output population-b\")\n", "\n", "sp1right = sp1.twinx()\n", "sp2right = sp2.twinx()\n", "\n", "sp1right.set_yticks([])\n", "sp1right.set_ylabel(\"stimulus \"+z1)\n", "sp2right.set_yticks([])\n", "sp2right.set_ylabel(\"stimulus \"+z2)\n", "\n", "sp1.legend( handles=[z1_patch], shadow=True )\n", "sp2.legend( handles=[z2_patch], shadow=True )\n", "\n", "# remove vertical gap between subplots\n", "plt.subplots_adjust(hspace=.0)\n", "plt.xticks([])\n", "plt.show()" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "We may also visualize the population of the output layer in the context of other layers for respective stimulus." ] }, { "cell_type": "code", "execution_count": 7, "metadata": {}, "outputs": [ { "data": { "application/javascript": [ "/* Put everything inside the global mpl namespace */\n", "window.mpl = {};\n", "\n", "\n", "mpl.get_websocket_type = function() {\n", " if (typeof(WebSocket) !== 'undefined') {\n", " return WebSocket;\n", " } else if (typeof(MozWebSocket) !== 'undefined') {\n", " return MozWebSocket;\n", " } else {\n", " alert('Your browser does not have WebSocket support. ' +\n", " 'Please try Chrome, Safari or Firefox ≥ 6. ' +\n", " 'Firefox 4 and 5 are also supported but you ' +\n", " 'have to enable WebSockets in about:config.');\n", " };\n", "}\n", "\n", "mpl.figure = function(figure_id, websocket, ondownload, parent_element) {\n", " this.id = figure_id;\n", "\n", " this.ws = websocket;\n", "\n", " this.supports_binary = (this.ws.binaryType != undefined);\n", "\n", " if (!this.supports_binary) {\n", " var warnings = document.getElementById(\"mpl-warnings\");\n", " if (warnings) {\n", " warnings.style.display = 'block';\n", " warnings.textContent = (\n", " \"This browser does not support binary websocket messages. \" +\n", " \"Performance may be slow.\");\n", " }\n", " }\n", "\n", " this.imageObj = new Image();\n", "\n", " this.context = undefined;\n", " this.message = undefined;\n", " this.canvas = undefined;\n", " this.rubberband_canvas = undefined;\n", " this.rubberband_context = undefined;\n", " this.format_dropdown = undefined;\n", "\n", " this.image_mode = 'full';\n", "\n", " this.root = $('
');\n", " this._root_extra_style(this.root)\n", " this.root.attr('style', 'display: inline-block');\n", "\n", " $(parent_element).append(this.root);\n", "\n", " this._init_header(this);\n", " this._init_canvas(this);\n", " this._init_toolbar(this);\n", "\n", " var fig = this;\n", "\n", " this.waiting = false;\n", "\n", " this.ws.onopen = function () {\n", " fig.send_message(\"supports_binary\", {value: fig.supports_binary});\n", " fig.send_message(\"send_image_mode\", {});\n", " if (mpl.ratio != 1) {\n", " fig.send_message(\"set_dpi_ratio\", {'dpi_ratio': mpl.ratio});\n", " }\n", " fig.send_message(\"refresh\", {});\n", " }\n", "\n", " this.imageObj.onload = function() {\n", " if (fig.image_mode == 'full') {\n", " // Full images could contain transparency (where diff images\n", " // almost always do), so we need to clear the canvas so that\n", " // there is no ghosting.\n", " fig.context.clearRect(0, 0, fig.canvas.width, fig.canvas.height);\n", " }\n", " fig.context.drawImage(fig.imageObj, 0, 0);\n", " };\n", "\n", " this.imageObj.onunload = function() {\n", " fig.ws.close();\n", " }\n", "\n", " this.ws.onmessage = this._make_on_message_function(this);\n", "\n", " this.ondownload = ondownload;\n", "}\n", "\n", "mpl.figure.prototype._init_header = function() {\n", " var titlebar = $(\n", " '
');\n", " var titletext = $(\n", " '
');\n", " titlebar.append(titletext)\n", " this.root.append(titlebar);\n", " this.header = titletext[0];\n", "}\n", "\n", "\n", "\n", "mpl.figure.prototype._canvas_extra_style = function(canvas_div) {\n", "\n", "}\n", "\n", "\n", "mpl.figure.prototype._root_extra_style = function(canvas_div) {\n", "\n", "}\n", "\n", "mpl.figure.prototype._init_canvas = function() {\n", " var fig = this;\n", "\n", " var canvas_div = $('
');\n", "\n", " canvas_div.attr('style', 'position: relative; clear: both; outline: 0');\n", "\n", " function canvas_keyboard_event(event) {\n", " return fig.key_event(event, event['data']);\n", " }\n", "\n", " canvas_div.keydown('key_press', canvas_keyboard_event);\n", " canvas_div.keyup('key_release', canvas_keyboard_event);\n", " this.canvas_div = canvas_div\n", " this._canvas_extra_style(canvas_div)\n", " this.root.append(canvas_div);\n", "\n", " var canvas = $('');\n", " canvas.addClass('mpl-canvas');\n", " canvas.attr('style', \"left: 0; top: 0; z-index: 0; outline: 0\")\n", "\n", " this.canvas = canvas[0];\n", " this.context = canvas[0].getContext(\"2d\");\n", "\n", " var backingStore = this.context.backingStorePixelRatio ||\n", "\tthis.context.webkitBackingStorePixelRatio ||\n", "\tthis.context.mozBackingStorePixelRatio ||\n", "\tthis.context.msBackingStorePixelRatio ||\n", "\tthis.context.oBackingStorePixelRatio ||\n", "\tthis.context.backingStorePixelRatio || 1;\n", "\n", " mpl.ratio = (window.devicePixelRatio || 1) / backingStore;\n", "\n", " var rubberband = $('');\n", " rubberband.attr('style', \"position: absolute; left: 0; top: 0; z-index: 1;\")\n", "\n", " var pass_mouse_events = true;\n", "\n", " canvas_div.resizable({\n", " start: function(event, ui) {\n", " pass_mouse_events = false;\n", " },\n", " resize: function(event, ui) {\n", " fig.request_resize(ui.size.width, ui.size.height);\n", " },\n", " stop: function(event, ui) {\n", " pass_mouse_events = true;\n", " fig.request_resize(ui.size.width, ui.size.height);\n", " },\n", " });\n", "\n", " function mouse_event_fn(event) {\n", " if (pass_mouse_events)\n", " return fig.mouse_event(event, event['data']);\n", " }\n", "\n", " rubberband.mousedown('button_press', mouse_event_fn);\n", " rubberband.mouseup('button_release', mouse_event_fn);\n", " // Throttle sequential mouse events to 1 every 20ms.\n", " rubberband.mousemove('motion_notify', mouse_event_fn);\n", "\n", " rubberband.mouseenter('figure_enter', mouse_event_fn);\n", " rubberband.mouseleave('figure_leave', mouse_event_fn);\n", "\n", " canvas_div.on(\"wheel\", function (event) {\n", " event = event.originalEvent;\n", " event['data'] = 'scroll'\n", " if (event.deltaY < 0) {\n", " event.step = 1;\n", " } else {\n", " event.step = -1;\n", " }\n", " mouse_event_fn(event);\n", " });\n", "\n", " canvas_div.append(canvas);\n", " canvas_div.append(rubberband);\n", "\n", " this.rubberband = rubberband;\n", " this.rubberband_canvas = rubberband[0];\n", " this.rubberband_context = rubberband[0].getContext(\"2d\");\n", " this.rubberband_context.strokeStyle = \"#000000\";\n", "\n", " this._resize_canvas = function(width, height) {\n", " // Keep the size of the canvas, canvas container, and rubber band\n", " // canvas in synch.\n", " canvas_div.css('width', width)\n", " canvas_div.css('height', height)\n", "\n", " canvas.attr('width', width * mpl.ratio);\n", " canvas.attr('height', height * mpl.ratio);\n", " canvas.attr('style', 'width: ' + width + 'px; height: ' + height + 'px;');\n", "\n", " rubberband.attr('width', width);\n", " rubberband.attr('height', height);\n", " }\n", "\n", " // Set the figure to an initial 600x600px, this will subsequently be updated\n", " // upon first draw.\n", " this._resize_canvas(600, 600);\n", "\n", " // Disable right mouse context menu.\n", " $(this.rubberband_canvas).bind(\"contextmenu\",function(e){\n", " return false;\n", " });\n", "\n", " function set_focus () {\n", " canvas.focus();\n", " canvas_div.focus();\n", " }\n", "\n", " window.setTimeout(set_focus, 100);\n", "}\n", "\n", "mpl.figure.prototype._init_toolbar = function() {\n", " var fig = this;\n", "\n", " var nav_element = $('
');\n", " nav_element.attr('style', 'width: 100%');\n", " this.root.append(nav_element);\n", "\n", " // Define a callback function for later on.\n", " function toolbar_event(event) {\n", " return fig.toolbar_button_onclick(event['data']);\n", " }\n", " function toolbar_mouse_event(event) {\n", " return fig.toolbar_button_onmouseover(event['data']);\n", " }\n", "\n", " for(var toolbar_ind in mpl.toolbar_items) {\n", " var name = mpl.toolbar_items[toolbar_ind][0];\n", " var tooltip = mpl.toolbar_items[toolbar_ind][1];\n", " var image = mpl.toolbar_items[toolbar_ind][2];\n", " var method_name = mpl.toolbar_items[toolbar_ind][3];\n", "\n", " if (!name) {\n", " // put a spacer in here.\n", " continue;\n", " }\n", " var button = $('